Khalid Shaikh Mohammed fingered his long, henna-dyed beard and stared down in silence on Saturday, pointedly ignoring a military commissions judge asking in vain whether the self-described architect of the Sept. 11 attacks understood what was being said and whether he was willing to be represented by his defense lawyers.

Minutes later, Ramzi bin al Shibh, another of the five detainees arraigned on Saturday as accused conspirators in the attacks, stood, knelt and started praying. Later, he shouted at the judge that he should address their complaints about prison conditions because “maybe you are not going to see me again.”

“Maybe they are going to kill us and say that we have committed suicide,” he added.

One defendant, Walid bin Attash, was wheeled into the courtroom in a restraint chair for reasons that were not disclosed.

Amid disruptions both passive and aggressive, the government’s attempt to restart its efforts to prosecute the five defendants in the long-delayed Sept. 11 case got off to a slow and rocky start in a trial that could ultimately result in their execution.

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